PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024934-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 429aa    MW: 47891.1 Da    PI: 8.905
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024934-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.7e-053353323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C++Cgk F r  nL+ H r H
  NNU_024934-RA 33 CEICGKGFQRDQNLQLHRRGH 53
                   *******************88 PP

2zf-C2H213.60.00019107129123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H +t+
  NNU_024934-RA 107 WKCEKCSKRYAVQSDWKAHSKTC 129
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.6E-53053IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.66E-63053No hitNo description
SMARTSM003550.0763153IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4893153IPR007087Zinc finger, C2H2
PROSITE patternPS0002803353IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.4E-495128IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.66E-6102127No hitNo description
SMARTSM00355130107127IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MLEKMAGEAI SDPEAEVIAL SPKTLMATNR FLCEICGKGF QRDQNLQLHR RGHNLPWKLR  60
QRTSKEPKKR VYVCPEKTCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS  120
DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCEALAE ETARVTAAYK MNNANAGNIS  180
YPFMGTSLRS NMVQHFSSVF KPIPSSNGAM DQTRPGLSLW MDQESQTNQA MSNNLTELHQ  240
MGSSSIGTVY ADPFSNPPHT DYQVNWAFGN KLSSTNAGEL TSTTPPLTNL KEVGSPRLAS  300
APSLYSTQHY HHQLPPAIMS ATALLQKAAE IGATSTNPSF LESYGLKCNN NQIQDGNKYN  360
DLFSPSLIPT NLGSDLDNSV RDLTTLNHLQ MYPRKRPKTL NDDAEEGQTR DFLGVGVQTI  420
CPSSINGWI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392398PRKRPKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245572.10.0PREDICTED: zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-136IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A061E4I00.0A0A061E4I0_THECC; C2H2 and C2HC zinc fingers superfamily protein
STRINGVIT_12s0028g03030.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-137C2H2 family protein